Package: paleopop 2.1.7

July Pilowsky

paleopop: Pattern-Oriented Modeling Framework for Coupled Niche-Population Paleo-Climatic Models

This extension of the poems pattern-oriented modeling (POM) framework provides a collection of modules and functions customized for paleontological time-scales, and optimized for single-generation transitions and large populations, across multiple generations.

Authors:Sean Haythorne [aut], July Pilowsky [aut, cre], Stuart Brown [aut], Damien Fordham [aut]

paleopop_2.1.7.tar.gz
paleopop_2.1.7.zip(r-4.7)paleopop_2.1.7.zip(r-4.6)paleopop_2.1.7.zip(r-4.5)
paleopop_2.1.7.tgz(r-4.6-any)paleopop_2.1.7.tgz(r-4.5-any)
paleopop_2.1.7.tar.gz(r-4.7-any)paleopop_2.1.7.tar.gz(r-4.6-any)
paleopop_2.1.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
paleopop/json (API)

# Install 'paleopop' in R:

install.packages('paleopop', repos = c('https://globalecologylab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/globalecologylab/paleopop/issues

Datasets:

bison_hs_raster - Bison vignette habitat suitability raster
siberia_raster - Bison vignette Siberia raster

On CRAN:

4.90 score 5 stars 16 scripts 315 downloads 5 exports 57 dependencies

Last updated from:6d53e406a0. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	331
source / vignettes	OK	269
linux-release-x86_64	OK	314
macos-release-arm64	OK	265
macos-oldrel-arm64	OK	228
windows-devel	OK	322
windows-release	OK	285
windows-oldrel	OK	277
wasm-release	OK	153

Exports:paleopop_simulator PaleoPopModel PaleoPopResults PaleoRegion region_subset

Dependencies:abc abc.data class classInt cli codetools cpp11 DBI DEoptimR doParallel e1071 extraDistr foreach foreign fossil gdistance glue igraph iterators KernSmooth lattice lhs lifecycle locfit magrittr maps MASS Matrix MatrixModels metRology nnet numDeriv pkgconfig poems proxy qs2 quantreg R6 raster Rcpp RcppArmadillo RcppParallel rlang robustbase s2 sf shapefiles sp SparseM stringfish survival terra trend truncnorm units vctrs wk

Workflow example for the steppe bison

Rendered frombison_example.Rmdusingknitr::rmarkdown

Last update: 2022-10-13
Started: 2021-04-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Bison vignette habitat suitability raster	bison_hs_raster
paleopop: Ensemble population modeling and simulation on paleo time scales	paleopop
Runs a customized population model simulation.	paleopop_simulator
R6 class representing a population model for the paleopop simulator	PaleoPopModel
R6 class representing paleopop simulator results.	PaleoPopResults
R6 class representing a paleontological region.	PaleoRegion
Function generates a region subset of matrix values based on a subset of coordinates within the original region (using nearest spatial neighbor if coordinates differ).	region_subset
Bison vignette Siberia raster	siberia_raster