Workflow example for the Tasmanian thylacine1 years ago
Setup | Workflow | Step 1: Build the population model for the study region | Tasmanian study region | IBRA bioregions | Density dependence function | Harvest function | Template model | Step 2: Build generators for dynamically generating model parameters | Initial habitat suitability | Habitat decline | Initial abundance and carrying capacity generator | Stage matrix generator | Dispersal generator | Example model run | Step 3: Sample model and generator parameters for each simulation | Step 4: Build a simulation manager to run each simulation | Step 5: Build a results manager to generate summary results (metrics) | Using the PopulationResults class | Generating summary metrics and matrices | Summary metric refinement | Step 6: Build a validator to select a model ensemble | Selected model ensemble | Model ensemble summary metrics | Model ensemble parameters | Model ensemble stochasticity | Model ensemble verification | Model ensemble usage | Summary | References
