{
  "_id": "6a104aa1acfb0bcc41c9fb95",
  "Package": "paleopop",
  "Type": "Package",
  "Title": "Pattern-Oriented Modeling Framework for Coupled Niche-Population\nPaleo-Climatic Models",
  "Version": "2.1.7",
  "Authors@R": "c(\nperson(\"Sean\", \"Haythorne\", email = \"sean.haythorne@adelaide.edu.au\", role = c(\"aut\")),\nperson(\"July\", \"Pilowsky\", email = \"pilowskyj@caryinstitute.org\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"https://orcid.org/0000-0002-6376-2585\")),\nperson(\"Stuart\", \"Brown\", email = \"s.brown@adelaide.edu.au\", role = c(\"aut\"),\ncomment = c(ORCID = \"https://orcid.org/0000-0002-0669-1418\")),\nperson(\"Damien\", \"Fordham\", email = \"damien.fordham@adelaide.edu.au\", role = c(\"aut\"),\ncomment = c(ORCID = \"https://orcid.org/0000-0003-2137-5592\")))",
  "Maintainer": "July Pilowsky <pilowskyj@caryinstitute.org>",
  "URL": "https://github.com/GlobalEcologyLab/paleopop/",
  "BugReports": "https://github.com/GlobalEcologyLab/paleopop/issues",
  "Description": "This extension of the poems pattern-oriented modeling\n(POM) framework provides a collection of modules and functions\ncustomized for paleontological time-scales, and optimized for\nsingle-generation transitions and large populations, across\nmultiple generations.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Language": "en-AU",
  "LazyData": "true",
  "RoxygenNote": "7.3.2",
  "Collate": "data.R PaleoPopModel.R PaleoPopResults.R PaleoRegion.R\npaleopop_simulator.R paleopop-package.R region_subset.R",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibglpk-dev make libxml2-dev libssl-dev libproj-dev\nlibsqlite3-dev libudunits2-dev",
  "Repository": "https://globalecologylab.r-universe.dev",
  "Date/Publication": "2024-12-27 20:25:11 UTC",
  "RemoteUrl": "https://github.com/globalecologylab/paleopop",
  "RemoteRef": "HEAD",
  "RemoteSha": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-10 08:15:21 UTC",
    "User": "root"
  },
  "Author": "Sean Haythorne [aut],\nJuly Pilowsky [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6376-2585>),\nStuart Brown [aut] (ORCID: <https://orcid.org/0000-0002-0669-1418>),\nDamien Fordham [aut] (ORCID: <https://orcid.org/0000-0003-2137-5592>)",
  "MD5sum": "6c1ad543051ed1c420cf5b253226f2e0",
  "_user": "globalecologylab",
  "_type": "src",
  "_file": "paleopop_2.1.7.tar.gz",
  "_fileid": "188715eedf7a1c128fa5c53c194798be5fd5439422cf3c0b832872fe31f7c8fc",
  "_filesize": 3542903,
  "_sha256": "188715eedf7a1c128fa5c53c194798be5fd5439422cf3c0b832872fe31f7c8fc",
  "_created": "2026-05-10T08:15:21.000Z",
  "_published": "2026-05-22T12:22:57.871Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77378352116,
      "time": 257,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6902254707"
    },
    {
      "job": 77378352413,
      "time": 251,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6902254052"
    },
    {
      "job": 77378352242,
      "time": 254,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6902274021"
    },
    {
      "job": 77378352000,
      "time": 217,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6902273193"
    },
    {
      "job": 77378351488,
      "time": 276,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6902229746"
    },
    {
      "job": 77378351658,
      "time": 162,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7160363378"
    },
    {
      "job": 77378352310,
      "time": 257,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6902254609"
    },
    {
      "job": 77378352330,
      "time": 275,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6902256453"
    },
    {
      "job": 77378352253,
      "time": 359,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6902264754"
    }
  ],
  "_buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/globalecologylab/paleopop",
  "_commit": {
    "id": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
    "author": "July Pilowsky <japilo@users.noreply.github.com>",
    "committer": "July Pilowsky <japilo@users.noreply.github.com>",
    "message": "Update NEWS.md\n",
    "time": 1735331111
  },
  "_maintainer": {
    "name": "July Pilowsky",
    "email": "pilowskyj@caryinstitute.org",
    "login": "japilo",
    "bluesky": "@pilowsky.me",
    "orcid": "0000-0002-6376-2585",
    "uuid": 7558969
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "poems",
      "version": ">= 1.0.0",
      "role": "Imports"
    },
    {
      "package": "R6",
      "version": ">= 2.5.0",
      "role": "Imports"
    },
    {
      "package": "sf",
      "version": ">= 0.9",
      "role": "Imports"
    },
    {
      "package": "trend",
      "version": ">= 1.1.4",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "raster",
      "role": "Suggests"
    }
  ],
  "_owner": "globalecologylab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 5,
  "_contributors": [
    {
      "user": "japilo",
      "count": 66,
      "uuid": 7558969
    },
    {
      "user": "seanhaythorne",
      "count": 13,
      "uuid": 17334859
    },
    {
      "user": "scbrown86",
      "count": 2,
      "uuid": 23713602
    }
  ],
  "_userbio": {
    "uuid": 17335070,
    "type": "organization",
    "name": "GLOBAL CH.E.C"
  },
  "_downloads": {
    "count": 229,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/paleopop"
  },
  "_devurl": "https://github.com/globalecologylab/paleopop",
  "_searchresults": 15,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/paleopop.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/globalecologylab/paleopop",
  "_realowner": "globalecologylab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "2.1.0",
      "date": "2021-04-22"
    },
    {
      "version": "2.1.1",
      "date": "2021-04-23"
    },
    {
      "version": "2.1.2",
      "date": "2021-10-14"
    },
    {
      "version": "2.1.3",
      "date": "2022-10-06"
    },
    {
      "version": "2.1.4",
      "date": "2022-10-13"
    },
    {
      "version": "2.1.5",
      "date": "2023-10-11"
    },
    {
      "version": "2.1.6",
      "date": "2024-09-24"
    },
    {
      "version": "2.1.7",
      "date": "2025-01-07"
    }
  ],
  "_exports": [
    "paleopop_simulator",
    "PaleoPopModel",
    "PaleoPopResults",
    "PaleoRegion",
    "region_subset"
  ],
  "_datasets": [
    {
      "name": "bison_hs_raster",
      "title": "Bison vignette habitat suitability raster",
      "object": "bison_hs_raster",
      "class": [
        "RasterBrick"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "siberia_raster",
      "title": "Bison vignette Siberia raster",
      "object": "siberia_raster",
      "class": [
        "RasterBrick"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "bison_hs_raster",
      "title": "Bison vignette habitat suitability raster",
      "topics": [
        "bison_hs_raster"
      ]
    },
    {
      "page": "paleopop",
      "title": "paleopop: Ensemble population modeling and simulation on paleo time scales",
      "topics": [
        "paleopop"
      ]
    },
    {
      "page": "paleopop_simulator",
      "title": "Runs a customized population model simulation.",
      "topics": [
        "paleopop_simulator"
      ]
    },
    {
      "page": "PaleoPopModel",
      "title": "R6 class representing a population model for the paleopop simulator",
      "topics": [
        "PaleoPopModel"
      ]
    },
    {
      "page": "PaleoPopResults",
      "title": "R6 class representing paleopop simulator results.",
      "topics": [
        "PaleoPopResults"
      ]
    },
    {
      "page": "PaleoRegion",
      "title": "R6 class representing a paleontological region.",
      "topics": [
        "PaleoRegion"
      ]
    },
    {
      "page": "region_subset",
      "title": "Function generates a region subset of matrix values based on a subset of coordinates within the original region (using nearest spatial neighbor if coordinates differ).",
      "topics": [
        "region_subset"
      ]
    },
    {
      "page": "siberia_raster",
      "title": "Bison vignette Siberia raster",
      "topics": [
        "siberia_raster"
      ]
    }
  ],
  "_pkglogo": "https://github.com/globalecologylab/paleopop/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/globalecologylab/paleopop/raw/HEAD/README.md",
  "_rundeps": [
    "abc",
    "abc.data",
    "class",
    "classInt",
    "cli",
    "codetools",
    "cpp11",
    "DBI",
    "DEoptimR",
    "doParallel",
    "e1071",
    "extraDistr",
    "foreach",
    "foreign",
    "fossil",
    "gdistance",
    "glue",
    "igraph",
    "iterators",
    "KernSmooth",
    "lattice",
    "lhs",
    "lifecycle",
    "locfit",
    "magrittr",
    "maps",
    "MASS",
    "Matrix",
    "MatrixModels",
    "metRology",
    "nnet",
    "numDeriv",
    "pkgconfig",
    "poems",
    "proxy",
    "qs2",
    "quantreg",
    "R6",
    "raster",
    "Rcpp",
    "RcppArmadillo",
    "RcppParallel",
    "rlang",
    "robustbase",
    "s2",
    "sf",
    "shapefiles",
    "sp",
    "SparseM",
    "stringfish",
    "survival",
    "terra",
    "trend",
    "truncnorm",
    "units",
    "vctrs",
    "wk"
  ],
  "_vignettes": [
    {
      "source": "bison_example.Rmd",
      "filename": "bison_example.html",
      "title": "Workflow example for the steppe bison",
      "author": "Global ChEC Lab",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Setup",
        "Table of Contents",
        "1. Create a PaleoRegion",
        "2. Generate dispersal and carrying capacity",
        "2.a. Generate dispersal matrix",
        "2.b. Generate carrying capacity landscape",
        "3. Create the model template",
        "4. Sample model and generator parameters for each simulation",
        "5. Run the simulations",
        "6. Examine the results"
      ],
      "created": "2021-04-19 07:31:44",
      "modified": "2022-10-13 00:12:23",
      "commits": 6
    }
  ],
  "_score": 4.8750612633917,
  "_indexed": true,
  "_nocasepkg": "paleopop",
  "_universes": [
    "globalecologylab",
    "japilo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1.7",
      "date": "2026-05-10T08:17:53.000Z",
      "distro": "noble",
      "commit": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
      "fileid": "1c5315468ad6739d9e3ff914682859a22e19b1bffd4b455c0df0923ea45d88e5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.1.7",
      "date": "2026-05-10T08:17:54.000Z",
      "distro": "noble",
      "commit": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
      "fileid": "5e3183f80a958b4aa0c7e3cbe25dcf17fd321cf511d38470a1dd90506da12d4c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1.7",
      "date": "2026-05-10T08:21:58.000Z",
      "commit": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
      "fileid": "c19dbc83f00699196b96cd39487269778734d93daf1f84cfc7a2c08137b42f7b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.1.7",
      "date": "2026-05-10T08:21:50.000Z",
      "commit": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
      "fileid": "40c4028cb75b86082d33a43b44123d9749112471eebfeae03afe255c4c47d978",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1.7",
      "date": "2026-05-10T08:17:13.000Z",
      "commit": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
      "fileid": "c6f5b46b5fde94c0bbb41f3155922b93fba7628cc76d16233d3193e8d4dfd25d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.1.7",
      "date": "2026-05-10T08:17:11.000Z",
      "commit": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
      "fileid": "8ecefe7d989b01d16d1e559af055210cd20d98f7eb36509b08e781f34967f9c2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.1.7",
      "date": "2026-05-10T08:19:22.000Z",
      "commit": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
      "fileid": "ce3867908457471835acaa6eedbb3aaea72d4d8400f71c1ec7b7299ffce2d09f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.1.7",
      "date": "2026-05-22T12:22:31.000Z",
      "commit": "6d53e406a0d92c5436d4111faf856b5b9ffaa09e",
      "fileid": "3890ed580dd2fc4cad4efe930be45bbad9bc809cc2efd4ca55cb8c4b575ecbc1",
      "status": "success",
      "buildurl": "https://github.com/r-universe/globalecologylab/actions/runs/25623722082"
    }
  ]
}